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Qin, H.T., Twyford, A.D., Zheng, W., Milne, R.I., Yan, L.J., Mo, Z.Q., Zhu, M.S., Nutzmann, H.W., Li, D.Z.*, Li, H.T.*, and Gao, L.M.* (2025). The genomic architecture of introgression during Rhododendron speciation. New Phytol. https://doi.org/10.1111/nph.70794.

Zhang, R., Stull, G.W., Jin, J.J., Wang, Y.H., Guo, Y., Yang, Z.Y., Li, H.T., An, K.L., Charboneau, J.L.M., Folk, R.A., et al. (2025). Phylogenetic Resolution and Conflict in the Species-Rich Flowering Plant Family Leguminosae. Syst Biol. https://doi.org/10.1093/sysbio/syaf057.

Shen, Z.F., Feng, Y., Moller, M., Burgess, K.S., Qin, H.T., Yang, J.B., Mo, Z.Q., Li, H.T., Li, D.Z., and Gao, L.M. (2025). Genomic DNA barcodes provide novel insights into species delimitation in the complex Camellia sect. Thea (Theaceae). BMC Plant Biol 25, 570. https://doi.org/10.1186/s12870-025-06612-9.

Zhao, L., Zhou, W., He, J., Li, D.Z., and Li, H.T.* (2024). Positive selection and relaxed purifying selection contribute to rapid evolution of male-biased genes in a dioecious flowering plant. eLife 12. https://doi.org//10.7554/eLife.89941.

Liu, J., Zhou, S.Z., Liu, Y.L., Zhao, B.Y., Yu, D., Zhong, M.C., Jiang, X.D., Cui, W.H., Zhao, J.X., Qiu, J., Liu, L.M., Guo, Z.H., Li, H.T., Tan, D.Y., Hu, J.Y., Li, D.Z. (2024). Genomes of Meniocus linifolius and Tetracme quadricornis reveal the ancestral karyotype and genomic features of core Brassicaceae. Plant Commun, 100878. https://doi.org/10.1016/j.xplc.2024.100878.

Zhao, L., Yang, Y.Y., Qu, X.J., Ma, H., Hu, Y., Li, H.T., Yi, T.S., and Li, D.Z. (2023). Phylotranscriptomic analyses reveal multiple whole-genome duplication events, the history of diversification and adaptations in the Araceae. Ann Bot 131, 199-214. https://doi.org/10.1093/aob/mcac062.

Zhang, L., Huang, Y.W., Huang, J.L., Ya, J.D., Zhe, M.Q., Zeng, C.X., Zhang, Z.R., Zhang, S.B., Li, D.Z.*, Li, H.T.*, and Yang, J.B.* (2023). DNA barcoding of Cymbidium by genome skimming: Call for next-generation nuclear barcodes. Mol Ecol Resour 23, 424-439. https://doi.org/10.1111/1755-0998.13719.

Guo, C., Luo, Y., Gao, L.M., Yi, T.S., Li, H.T., Yang, J.B., and Li, D.Z. (2023). Phylogenomics and the flowering plant tree of life. J Integr Plant Biol 65, 299-323. https://doi.org/10.1111/jipb.13415.

Yu, Y., Li, H.T., Wu, Y.H., and Li, D.Z. (2021). Correlation Analysis Reveals an Important Role of GC Content in Accumulation of Deletion Mutations in the Coding Region of Angiosperm Plastomes. J Mol Evol 89, 73-80. https://doi.org/10.1007/s00239-020-09987-5.

Wu, H., Ma, P.F., Li, H.T., Hu, G.X., and Li, D.Z. (2021). Comparative plastomic analysis and insights into the phylogeny of Salvia (Lamiaceae). Plant Diversity 43, 15-26. https://doi.org/10.1016/j.pld.2020.07.004.

Lu, M.Y., Gao, L.M., Li, H.T., and He, F.L. (2021). The patterns of vascular plant discoveries in China. Ecology and Evolution 11, 12378-12388. https://doi.org/10.1002/ece3.7971.

Li, H.T., Luo, Y., Gan, L., Ma, P.-F., Gao, L.M., Yang, J.B., Cai, J., Gitzendanner, M.A., Fritsch, P.W., Zhang, T., et al. (2021). Plastid phylogenomic insights into relationships of all flowering plant families. BMC Biology 19, 232. https://doi.org/10.1186/s12915-021-01166-2.

Yao, G., Jin, J.J., Li, H.T., Yang, J.B., Mandala, V.S., Croley, M., Mostow, R., Douglas, N.A., Chase, M.W., Christenhusz, M.J.M., et al. (2019). Plastid phylogenomic insights into the evolution of Caryophyllales. Mol Phylogenet Evol 134, 74-86. https://doi.org/10.1016/j.ympev.2018.12.023.

Li, H.T., Yi, T.S., Gao, L.M., Ma, P.F., Zhang, T., Yang, J.B., Gitzendanner, M.A., Fritsch, P.W., Cai, J., Luo, Y., et al. (2019). Origin of angiosperms and the puzzle of the Jurassic gap. Nat Plants 5, 461-470. https://doi.org/10.1038/s41477-019-0421-0.

Meng, J., Li, X., Li, H.T., Yang, J., Wang, H., and He, J. (2018). Comparative Analysis of the Complete Chloroplast Genomes of Four Aconitum Medicinal Species. Molecules 23. https://doi.org/10.3390/molecules23051015.

Zhang, S.D., Jin, J.J., Chen, S.Y., Chase, M.W., Soltis, D.E., Li, H.T., Yang, J.B., Li, D.Z., and Yi, T.S. (2017). Diversification of Rosaceae since the Late Cretaceous based on plastid phylogenomics. New Phytol 214, 1355-1367. https://doi.org/10.1111/nph.14461.

Fu, C.N., Li, H.T., Milne, R., Zhang, T., Ma, P.F., Yang, J., Li, D.Z., and Gao, L.M. (2017). Comparative analyses of plastid genomes from fourteen Cornales species: inferences for phylogenetic relationships and genome evolution. BMC Genomics 18, 956. https://doi.org/10.1186/s12864-017-4319-9.

Zhang, T., Zeng, C.X., Yang, J.B., Li, H.T.*, and Li, D.Z.* (2016). Fifteen novel universal primer pairs for sequencing whole chloroplast genomes and a primer pair for nuclear ribosomal DNAs. J Syst Evol 54, 219-227. https://doi.org/10.1111/jse.12197.

Luo, Y., Ma, P.F., Li, H.T., Yang, J.B., Wang, H., and Li, D.Z. (2016). Plastid Phylogenomic Analyses Resolve Tofieldiaceae as the Root of the Early Diverging Monocot Order Alismatales. Genome Biol Evol 8, 932-945. https://doi.org/10.1093/gbe/evv260.

Khan, S., Nadir, S., Wang, X., Khan, A., Xu, J., Li, M., Li, H.T., Khan, S., and Karunarathna, S.C. (2016). Using in silico techniques: Isolation and characterization of an insect cuticle-degrading-protease gene from Beauveria bassiana. Microb Pathog 97, 189-197. https://doi.org/10.1016/j.micpath.2016.05.024.

Cai, J., Ma, P.F., Li, H.T., and Li, D.Z. (2015). Complete Plastid Genome Sequencing of Four Tilia Species (Malvaceae): A Comparative Analysis and Phylogenetic Implications. Plos One 10, e0142705. https://doi.org/10.1371/journal.pone.0142705.

Yang, J.B., Li, D.Z.*, and Li, H.T.* (2014). Highly effective sequencing whole chloroplast genomes of angiosperms by nine novel universal primer pairs. Mol Ecol Resour 14, 1024-1031. https://doi.org/10.1111/1755-0998.12251.

Zhao, Y.H., Larson-Rabin, Z., Wang, G.Y., Moller, M., Li, C.Y., Zhang, J.P., Li, H.T., and Li, D.Z. (2013). Developmental genetics of the perianthless flowers and bracts of a paleoherb species, Saururus chinensis. Plos One 8, e53019. https://doi.org/10.1371/journal.pone.0053019.

Yang, J.B., Yang, S.X., Li, H.T.*, Yang, J., and Li, D.Z.* (2013). Comparative chloroplast genomes of Camellia species. Plos One 8, e73053. https://doi.org/10.1371/journal.pone.0073053.

Yang, J.B., Tang, M., Li, H.T.*, Zhang, Z.R., and Li, D.Z.* (2013). Complete chloroplast genome of the genus Cymbidium: lights into the species identification, phylogenetic implications and population genetic analyses. BMC Evol Biol 13, 84. https://doi.org/10.1186/1471-2148-13-84.

Li, H.T., Zeng, C.X., Gao, L.M., Yi, T.S., and Yang, J.B. (2012). Genetic Information and Technologies Related to iFlora. Plant Diversity and Resourcues 34, 585-591.

Zhang, L., Li, H.T., Gao, L.M., Yang, J.B., Li, D.Z., Cannon, C.H., Chen, J., and Li, Q.J. (2011). Phylogeny and evolution of bracts and bracteoles in Tacca (Dioscoreaceae). J Integr Plant Biol 53, 901-911. https://doi.org/10.1111/j.1744-7909.2011.01076.x.

Li, H.T., Wang, H., Yang, J.B., and Li, D.Z. (2011). Genetic diversity of the traditional Chinese medicinal plant Ypsilandra thibetica (Melanthiaceae): Applications for conservation. Biochem Syst Ecol 39, 425-433. https://doi.org/10.1016/j.bse.2011.06.004.

Huang, J.L., Zeng, C.X., Li, H.T., and Yang, J.B. (2011). Isolation and characterization of 15 microsatellite markers from the spring orchid (Cymbidium goeringii) (Orchidaceae). Am J Bot 98, e76-77. https://doi.org/10.3732/ajb.1000446.

Li, D.Z., Gao, L.M., Li, H.T., Wang, H., Ge, X.J., Liu, J.Q., Chen, Z.D., Zhou, S.L., Chen, S.L., et al. (2011). Comparative analysis of a large dataset indicates that internal transcribed spacer (ITS) should be incorporated into the core barcode for seed plants. Proc Natl Acad Sci U S A 108, 19641-19646. https://doi.org/10.1073/pnas.1104551108.

Li, H.T., Yang, J.B., Li, D.Z., Moller, M., and Shah, A. (2010). A molecular phylogenetic study of Hemsleya (Cucurbitaceae) based on ITS, rpl16, trnH-psbA, and trnL DNA sequences. Plant Syst Evol 285, 23-32. https://doi.org/10.1007/s00606-009-0252-y.

Yang, J.B., Yang, J., Li, H.T., Zhao, Y., and Yang, S.X. (2009). Isolation and characterization of 15 microsatellite markers from wild tea plant (Camellia taliensis) using FIASCO method. Conserv Genet 10, 1621-1623. https://doi.org/10.1007/s10592-009-9814-3.

Yang, J.B., Li, H.T., Li, D.Z., Liu, J., and Gao, L.M. (2009). Isolation and Characterization of Microsatellite Markers in the Endangered Species Taxus wallichiana Using the FIASCO Method. Hortscience 44, 2043-2045. https://doi.org/10.21273/Hortsci.44.7.2043.

Lu, L., Fritsch, P.W., Wang, H., Li, H.T., Li, D.Z., and Chen, J.Q. (2009). Pollen morphology of Gaultheria L. and related genera of subfamily Vaccinioideae: Taxonomic and evolutionary significance. Rev Palaeobot Palyno 154, 106-123. https://doi.org/10.1016/j.revpalbo.2008.12.009.

Shah, A., Li, D.Z., Gao, L.M., Li, H.T., and Moller, M. (2008). Genetic diversity within and among populations of the endangered species Taxus fuana (Taxaceae) from Pakistan and implications for its conservation. Biochem Syst Ecol 36, 183-193. https://doi.org/10.1016/j.bse.2007.09.012.

Li, H.T., and Li, D.Z. (2008). Systematic position of Gomphogyne (Cucurbitaceae) inferred from ITS, rpl16 and trnS-trnR DNA sequences. J Syst Evol 46, 595-599. https://doi.org/10.3724/Sp.J.1002.2008.07048.

Zhang, J.L., Zhang, C.Q., Gao, L.M., Yang, J.B., and Li, H.T. (2007). Natural hybridization origin of Rhododendron agastum (Ericaceae) in Yunnan, China: inferred from morphological and molecular evidence. J Plant Res 120, 457-463. https://doi.org/10.1007/s10265-007-0076-1.

Li, H.T., Yang, J.B., and Li, D.Z. (2007). Hemsleya kunmingensis (Cucurbitaceae), a new species from China. Ann Bot Fenn 44, 485-491.

Zhang, L., Li, Q.J., Li, H.T., Chen, J., and Li, D.Z. (2006). Genetic diversity and geographic differentiation in Tacca chantrieri (Taccaceae): an autonomous selfing plant with showy floral display. Ann Bot 98, 449-457. https://doi.org/10.1093/aob/mcl123.

Yang, J.B., Li, H.T., Yang, S.X., Li, D.Z., and Yang, Y.Y. (2006). The Application of Four DNA Sequences to Studying Molecular Phylogeny of Camellia (Theaceae). Acta Botanica Yunnanica 28, 108-114.